Fungal farming

Fungus farming is a form of symbiosis between fungi and fungi-growing organism in which a species facilitates the growth of a fungal species in order to create a stable food supply. This mutualistic behavior is an example of how two species can co-evolve over time through interactions that are mutually beneficial and often results in obligate relationships.[1]

Leaf cutter ants carrying leaves to feed their fungus crop.

Fungus farming is thought to have originated some 30-60 million years ago and evolved in three different insects, specifically ants, beetles, and termites.[2] While it was previously thought to be exclusive to insects, recent findings has uncovered this behavior in a species of snail which indicates that this phenomenon may be more common than previously thought.

Farming Process

Similar to human agriculture, fungus farmers must go through a process to prepare and care for their crops. In order to culture fungi, farmers must prepare the substrate and inoculate their crop in prime growing conditions. Growers must also tend to their crop as it grows to ensure the success of the crop. Tending to crops can be in the form of fertilization or as protection from competition, pests, and pathogens. Once the crop is fully grown the farmers can harvest and consume the fungi.[1][3] Subsisting on farmed fungus over time creates a nutritional dependency.[2] Fungus farming relationships are obligate mutualisms because both the fungus and farmer rely on each other due to generations of the dependency.[4]

The exact process a fungus farmer goes through to cultivate their crop can vary among species of farmers, as well as species of fungi. Fungus cultivation can be characterized as either high-level food production or low-level food production.[5] Low-level food production consists of altering the environment to promote or protect the fungus. High-level fungus production involves more complicated steps such as transporting and planting the fungus, fertilization, and protecting the crops physically or chemically.[5][3]

Terrestrial Systems

The majority of fungus farming mutualisms are found in terrestrial systems because this relationship evolved in 3 distinct insect lineages, ants(Formicidae), termites(Isoptera), and beetles(Coleoptera). These mutualisms evolved independently in each of the 3 insects resulting in unique farming practices between the various farmers.[2]

Ants

Fungus-growing ants are a monophyletic group that is a part of the Formicidae family and grouped together into a tribe known as Attina. Attine ants are thought to have originated around 40-60 million years ago in the tropical forests of South America.[6][7] Currently there are more than 200 known species of attine ants, including the well-known leaf-cutter ants, and they are all found in the western hemisphere, in tropical rainforests.[5] It is currently unknown how these farming relationships started, but there have been 2 models put forward to try and explain its origins.[7] The “consumption first” model states that the cultured fungi began as part of the ant’s diet and overtime the ants started to grow the fungi which then lead to the transferring and spread of the crop.[7] The opposing model is called the “transmission first” model which states the fungi could have been dispersed by the ants before they became part of their diet.[7]

An Atta colombica queen and workers standing in their fungal farm. Atta colombica is a species of leafcutter ants.

The farming process begins when a young female leaves the mother colony to find her own. The founding ant brings with her some fugus from the parent colony to start the farm for the new colony. The farms are grown in enclosed, often subterranean burrows and the ants must collect some type of growth material and substrate to propagate their crop. Most attine farmers grow Basidiomycota fungi, with a majority of fungi belonging to the Leucocoprinus genus.[8] While the crops grow the ants must tend to their crop and this can include fertilization with organic and fecal material or weeding of unwanted invaders or predators. [1] While the general process of fungal farming is relatively similar between different species of attine ants, there are some unique differences. Throughout the history of the fungus farming ants there have been five agriculture systems that have been observed. The five agriculture systems of attine ants are 1) Lower agriculture, 2) Coral-fungal agriculture, 3) Yeast agriculture, 4) Generalized higher agriculture, and 5) Leafcutter agriculture.[8]

Lower agriculture refers to the simplest and oldest form of fungal farming. Ants belonging to this system culture Leucocoprinus fungi and employ a number of different substrate types including bits of grasses, fruit flesh, seeds, insect waste, wood, flower parts, and other organic materials.[8]

Coral-fungal agriculture differs from the other systems because this agricultural system grows Pterulaceae fungi instead of fungi belonging to the Leucocoprineae. This system is poorly studied but some of the substrates that have been found are insect frass, seeds, detritus material, wood, and even arthropod parts.[8]

Yeast agriculture is where the attine ants grow yeats-like fungi that are closely related to Leucocoprineae. In this system the fungi are grown as unicellular nodules rather than a multicellular phase.[8] The substrate that is typically used for this system is arthropod waste, but there have been some species that reguritate nectar and sap onto the crops to promote its growth.[8]

Generalized higher agriculutre is characterized by domesticated fungi that are not considered free-living. These domesticated fungi prodcue nutrient righ hyphal tips, called “gongylidia”.[8] Ants that utlize this system use similar substrates as the previous systems, but also collect live and fresh plant matter to use as substrate, such as plant shoots, flower petals, and leaves.[8]

Leafcutter agriculture is the final and most complex system of fungus farming. This system differs from generalized higher agriculutre mainly because leafcutter agriculutre primarily use cut plant matreial as growth substrate.[8] The well-known Leafcutter ants belong to this agriculutre system, hence the name. Leafcutter ants not only physically cut plant material from living plants for substrate use, but also tend to their crop by weeding out unwanted microfungi.[9]

Termites

Around the same time ants began to develop their mutualistic relationships with fungus, termites were also developing their own farming techniques. Fungus-growing termites, Macrotermitinae, belong to the Termitidae family and are thought to have originated around 30 million years ago in African rainforest.[10] Today there are around 300 species of termites that cultivate fungi and they can be found throughout Africa, Asia, and Europe. [2] A defining characteristic of Macrotermitinae are the complex mounds that these termites make that house the termites and the fungus farms. Inside of these mounds there are specialized burrows that are known as combs that are used to cultivate their fungi.[2]

An exposed termite mound shows one of their hidden fungal farms.

Once the comb burrow has been dug out the termites prepare the combs by depositing feces. The feces is nutrient rich and mixed with semi-digested plant material such as leaves, grass, and wood.[2] The termites grow a specific fungus known as Termitomyces, which belong to the Basidiomycota. These fungi can survive the digestion of the termites when consumed and this allows the termites to deposit both the fungal spores and fecal matter together in the combs. [2] Depositing the spores and feces allows the termites to plant their crop but also fertilize it at the same time. Unlike the attine ants, the fungi planted by termites grow until they form fruiting bodies and spores.[11] The farmers then harvest and consume the fungi, but since the spores can survive the gut of the termite the cycle can continue.

Beetles

Beetles are a type of insect that make up the Coleoptera and include some beetles that have been found to cultivate fungi. The beetles that are found to grow fungi are considered weevils, a subfamily of Coleopterans. These beetles create burrows in host trees and the fungal farms are found inside some of these burrows. This symbiosis between beetles and fungi are thought to have originated around 60 million years ago.[12] Fungal farming in ants and termites evolved only once but this mutualism is believed to have evolved at least 7 times in beetles. [1] Beetles that engage in fungus faming are known as Ambrosia beetles because they found to exclusively grow ambrosia fungi.[13] Presently there are over 3000 known beetles that farm fungus and majority of them are found in tropical forests, there are a few species that are found in temperate systems.[12] The reason for the greater abundance of fungal farming beetles in the tropics is because temperate habitats are typically drier and may not have enough moisture to support fungal cultivation.[12]

The larvae of Xylosandrus crassiusculus, a species of ambrosia beetles surrounded by a black fungus farm.

To begin the farming process the beetles will burrow into living, and sometimes dead, trees and create elaborate tunnels. Once the tunnels are complete the beetles can start to inoculate their crop. Beetles employ a unique method to acquire their crops. The beetles have a morphological structure known as a “mycangia” which is simply a pocket on the beetle that is specifically used to transport fungi.[12] Using their mycangia, beetles collect fungus spores and bring them back to the host tree which harbors the beetle colony and begin to plant their crop.[12] The fungi are planted within the walls of the tunnels and left to grow into the host plants xylem and phloem, which further promotes their growth.[12] Once the crop grows to maturity the fungus will form a layer of hyphae on the walls of the burrow known as “ambrosia”.[14] Both adult and larvae feed on these fungi and when it is time for a beetle to leave the colony it will bring spores with it in its mycangia to ensure the success of the future farm.

Aquatic Systems

While the majority of fungus farmers are found in terrestrial systems that does not mean that fungus farming is exclusive to those systems. A study in 2003 found the first evidence of fungal farming in an aquatic system and outside of the insect family.

Marine snail

The Periwinkle snail, Littoraria irrorata, is the first observed example of fungal farming that is not associated with terrestrial systems or insects. This snail is a grazer that is typically found on marsh cordgrasses, such as Spartina alterniflora. [1] While it was previously though that these snails were detritivores, researchers discovered that the snail is an active grazer of these grasses. [1] This grazing is a key part of the fungal farming process.

Littoraria irrorata on marsh grasses where their fungal farms are located

The first step in the farming process of these snails is preparing the substrate. To prepare the substrate the snail uses its radulae to cut openings in the leaf surface. This activity is mainly to promote the growth of fungi because the snails do not feed on the cut plant material. [1] The wounds expose the inner plant material which is a nutritious food source for ascomycete fungi and these fungi populate around these wounds. To increase the success of their farming efforts, the snail will deposit fecal pellets that are rich in nitrogen and hyphae onto the open wounds where the fungi have invaded. [1] These fecal pellets act as a fertilizer for the fungi and may also increase propagules due to the hyphae, although it is unknown whether the hyphae are vital. [1] Some unique aspects of the fungal farming process of these snails is that they do not inoculate their crop or weed out unwanted invaders. [1] The spores of these fungi are rather abundant in the system so snails do not need to find spores because they already present. [1] Even though the fungi are the preferred food of the snails, this relationship is facultative for both species. [1]

References

[1] Silliman, B.R., Newell, S.Y., 2003. Fungal farming in a snail. Proc. Natl. Acad. Sci. U. S. A. 100, 15643–15648. https://doi.org/10.1073/pnas.2535227100

[2] Mueller, U.G., Gerardo, N., 2002. Fungus-farming insects: Multiple origins and diverse evolutionary histories. Proc. Natl. Acad. Sci. U. S. A. 99, 15247–15249. https://doi.org/10.1073/pnas.242594799

[3] Wang, L., Feng, Y., Tian, J., Xiang, M., Sun, J., Ding, J., Yin, W.B., Stadler, M., Che, Y., Liu, X., 2015. Farming of a defensive fungal mutualist by an attelabid weevil. ISME J. 9, 1793–1801. https://doi.org/10.1038/ismej.2014.263

[4] Toki, W., Tanahashi, M., Togashi, K., Fukatsu, T., 2012. Fungal farming in a non-social beetle. PLoS One 7. https://doi.org/10.1371/journal.pone.0041893

[5] Rehner, S. a, 2005. Phyllogenetics of the insect pathogenic genus Beauveria, Insect-fungal associations: ecology and evolution.

[6] Branstetter, M.G., Ješovnik, A., Sosa-Calvo, J., Lloyd, M.W., Faircloth, B.C., Brady, S.G., Schultz, T.R., 2017. Dry habitats were crucibles of domestication in the evolution of agriculture in ants. Proc. R. Soc. B Biol. Sci. 284. https://doi.org/10.1098/rspb.2017.0095

[7] Mueller, U.G., Schultz, T.R., Currie, C.R., Adams, R.M.M., Schultz, R., 2001. The Origin of the Attine Ant-Fungus Mutualism David Malloch Source : The Quarterly Review of Biology , Vol . 76 , No . 2 ( Jun ., 2001 ), pp . 169-197 Published by : The University of Chicago Press Stable URL : http://www.jstor.org/stable/2664003 . The Un 76, 169–197.

[8] Mehdiabadi, N.J., Schultz, T.R., 2009. Natural histroy and phylogeny of the fungus-farming ants (Hymenoptera: Formicidae: Myrmicinae: Attini). Myrmecological News 13, 37–55

[9] Rodrigues, A., Bacci, M., Mueller, U.G., Ortiz, A., Pagnocca, F.C., 2008. Microfungal “weeds” in the leafcutter ant symbiosis. Microb. Ecol. 56, 604–614. https://doi.org/10.1007/s00248-008-9380-0

[10] Aanen, D.K., Eggleton, P., 2005. Fungus-growing termites originated in African rain forest. Curr. Biol. 15, 851–855. https://doi.org/10.1016/j.cub.2005.03.04

[11] Aanen, D.K., Eggleton, P., Rouland-Lefèvre, C., Guldberg-Frøslev, T., Rosendahl, S., Boomsma, J.J., 2002. The evolution of fungus-growing termites and their mutualistic fungal symbionts. Proc. Natl. Acad. Sci. U. S. A. 99, 14887–14892. https://doi.org/10.1073/pnas.222313099

[12] Farrell, B.D., Sequeira, A.S., O’Meara, B.C., Normark, B.B., Chung, J.H., Jordal, B.H., 2001. The evolution of agriculture in beetles (Curculionidae: Scolytinae and Platypodinae). Evolution (N. Y). 55, 2011–2027. https://doi.org/10.1111/j.0014-3820.2001.tb01318.x

[13] Hulcr, J., Atkinson, T.H., Cognato, A.I., Jordal, B.H., McKenna, D.D., 2015. Morphology, Taxonomy, and Phylogenetics of Bark Beetles, Bark Beetles: Biology and Ecology of Native and Invasive Species. https://doi.org/10.1016/B978-0-12-417156-5.00002-2

[14] BEAVER, R.A., 1989. Insect–Fungus Relationships in the Bark and Ambrosia Beetles. Insect-fungus Interact. 121–143. https://doi.org/10.1016/b978-0-12-751800-8.50011-2